IL_5VPO_080

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_080 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.0645

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5VPO|1|RA|G|738
5VPO|1|RA|G|739
5VPO|1|RA|U|740
5VPO|1|RA|G|741
*
5VPO|1|RA|C|756
5VPO|1|RA|U|757
5VPO|1|RA|C|758

Current chains

Chain RA

23S rRNA

Nearby chains