IL_5VPO_101

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5VPO|1|RA|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_101 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.286

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5VPO|1|RA|G|1087
5VPO|1|RA|A|1088
5VPO|1|RA|G|1089
5VPO|1|RA|U|1090
5VPO|1|RA|G|1091
*
5VPO|1|RA|C|1100
5VPO|1|RA|U|1101
5VPO|1|RA|C|1102

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36