IL_5VPO_142

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5VPO|1|RA|C|2111, 5VPO|1|RA|G|2112, 5VPO|1|RA|U|2113, 5VPO|1|RA|G|2115, 5VPO|1|RA|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_142 not in the Motif Atlas

Geometric match to IL_7Q82_001

Geometric discrepancy: 0.3166

The information below is about IL_7Q82_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5VPO|1|RA|G|2110
5VPO|1|RA|C|2111
5VPO|1|RA|G|2112
5VPO|1|RA|U|2113
5VPO|1|RA|A|2114
5VPO|1|RA|G|2115
5VPO|1|RA|G|2116
5VPO|1|RA|A|2117
5VPO|1|RA|U|2118
5VPO|1|RA|A|2119
5VPO|1|RA|G|2120
*
5VPO|1|RA|C|2178
5VPO|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains