IL_5VPO_158

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5VPO|1|RA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_158 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0846

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5VPO|1|RA|U|2636
5VPO|1|RA|U|2637
5VPO|1|RA|G|2638
5VPO|1|RA|A|2639
5VPO|1|RA|G|2640
*
5VPO|1|RA|C|2774
5VPO|1|RA|A|2775
5VPO|1|RA|A|2776
5VPO|1|RA|G|2777
5VPO|1|RA|A|2778
5VPO|1|RA|U|2779
5VPO|1|RA|G|2780
5VPO|1|RA|A|2781
5VPO|1|RA|G|2782

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RN

50S ribosomal protein L13