IL_5VPO_178

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

5VPO|1|XA|G|129|||A, 5VPO|1|XA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_178 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.1554

The information below is about IL_6CZR_119

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5VPO|1|XA|U|129
5VPO|1|XA|G|129|||A
5VPO|1|XA|A|130
5VPO|1|XA|C|131
*
5VPO|1|XA|G|231
5VPO|1|XA|G|232

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17

Chain XT

30S ribosomal protein S20