IL_5VPO_209

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5VPO|1|XA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_209 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.119

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5VPO|1|XA|G|933
5VPO|1|XA|C|934
5VPO|1|XA|A|935
*
5VPO|1|XA|U|1380
5VPO|1|XA|U|1381
5VPO|1|XA|C|1382
5VPO|1|XA|C|1383
5VPO|1|XA|C|1384

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9

Chain XV

P-site ASL SufA6