IL_5VPO_273
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5VPO|1|YA|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPO_273 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2463
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5VPO|1|YA|C|1043
5VPO|1|YA|G|1044
5VPO|1|YA|A|1045
5VPO|1|YA|A|1046
5VPO|1|YA|G|1047
5VPO|1|YA|A|1048
5VPO|1|YA|C|1049
5VPO|1|YA|A|1050
5VPO|1|YA|G|1051
*
5VPO|1|YA|U|1108
5VPO|1|YA|C|1109
5VPO|1|YA|G|1110
5VPO|1|YA|A|1111
5VPO|1|YA|G|1112
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YH
- 50S ribosomal protein L6
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