IL_5VPO_278
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 5VPO|1|YA|U|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPO_278 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.1033
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
5VPO|1|YA|C|1208
5VPO|1|YA|G|1209
5VPO|1|YA|A|1210
5VPO|1|YA|U|1211
5VPO|1|YA|G|1212
5VPO|1|YA|A|1213
5VPO|1|YA|A|1214
5VPO|1|YA|G|1215
*
5VPO|1|YA|U|1234
5VPO|1|YA|G|1235
5VPO|1|YA|G|1236
5VPO|1|YA|A|1237
5VPO|1|YA|G|1238
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YU
- 50S ribosomal protein L20
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