IL_5VPP_020
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_020 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.1692
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
5VPP|1|QA|C|504
5VPP|1|QA|G|505
5VPP|1|QA|G|506
5VPP|1|QA|C|507
5VPP|1|QA|C|508
5VPP|1|QA|A|509
5VPP|1|QA|A|510
5VPP|1|QA|C|511
*
5VPP|1|QA|G|540
5VPP|1|QA|G|541
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QD
- 30S ribosomal protein S4
- Chain QE
- 30S ribosomal protein S5
- Chain QL
- 30S ribosomal protein S12
Coloring options: