3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CGG*CCCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_028 not in the Motif Atlas
Geometric match to IL_1M5K_004
Geometric discrepancy: 0.3471
The information below is about IL_1M5K_004
Detailed Annotation
Isolated cWH basepair
Broad Annotation
Isolated cWH basepair
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

5VPP|1|QA|C|656
5VPP|1|QA|G|657
5VPP|1|QA|G|658
*
5VPP|1|QA|C|747
5VPP|1|QA|C|748
5VPP|1|QA|C|749
5VPP|1|QA|G|750

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QO
30S ribosomal protein S15

Coloring options:


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