IL_5VPP_038

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5VPP|1|QA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_038 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.2689

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5VPP|1|QA|G|933
5VPP|1|QA|C|934
5VPP|1|QA|A|935
*
5VPP|1|QA|U|1380
5VPP|1|QA|U|1381
5VPP|1|QA|C|1382
5VPP|1|QA|C|1383
5VPP|1|QA|C|1384

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QV

Transfer RNA; tRNA