IL_5VPP_043

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5VPP|1|QA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_043 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1875

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5VPP|1|QA|U|1052
5VPP|1|QA|G|1053
5VPP|1|QA|C|1054
5VPP|1|QA|A|1055
5VPP|1|QA|U|1056
*
5VPP|1|QA|A|1204
5VPP|1|QA|U|1205
5VPP|1|QA|G|1206

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z