IL_5VPP_048

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

5VPP|1|QA|A|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_048 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.2353

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

5VPP|1|QA|C|1128
5VPP|1|QA|C|1129
5VPP|1|QA|A|1130
5VPP|1|QA|G|1131
5VPP|1|QA|C|1132
*
5VPP|1|QA|G|1142
5VPP|1|QA|G|1143

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9