IL_5VPP_049
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_049 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1356
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5VPP|1|QA|U|1247
5VPP|1|QA|A|1248
5VPP|1|QA|C|1249
5VPP|1|QA|A|1250
5VPP|1|QA|A|1251
5VPP|1|QA|A|1252
5VPP|1|QA|G|1253
*
5VPP|1|QA|C|1284
5VPP|1|QA|A|1285
5VPP|1|QA|A|1286
5VPP|1|QA|A|1287
5VPP|1|QA|A|1288
5VPP|1|QA|A|1289
5VPP|1|QA|G|1290
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QG
- 30S ribosomal protein S7
- Chain QI
- 30S ribosomal protein S9
- Chain QJ
- 30S ribosomal protein S10
- Chain QN
- 30S ribosomal protein S14 type Z
Coloring options: