IL_5VPP_053

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5VPP|1|QA|C|1400, 5VPP|1|QA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_053 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.2335

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5VPP|1|QA|C|1399
5VPP|1|QA|C|1400
5VPP|1|QA|G|1401
*
5VPP|1|QA|C|1501
5VPP|1|QA|A|1502
5VPP|1|QA|A|1503
5VPP|1|QA|G|1504

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QX

messenger RNA