3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CACG*CGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_056 not in the Motif Atlas
Geometric match to IL_8CRE_469
Geometric discrepancy: 0.2363
The information below is about IL_8CRE_469
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11399.2
Basepair signature
cWW-cHW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

5VPP|1|QA|C|1407
5VPP|1|QA|A|1408
5VPP|1|QA|C|1409
5VPP|1|QA|G|1410
*
5VPP|1|QA|C|1490
5VPP|1|QA|G|1491
5VPP|1|QA|A|1492
5VPP|1|QA|A|1493
5VPP|1|QA|G|1494

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7051 s
Application loaded.