IL_5VPP_058

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_058 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1205

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

5VPP|1|QA|G|1416
5VPP|1|QA|G|1417
5VPP|1|QA|A|1418
5VPP|1|QA|G|1419
*
5VPP|1|QA|U|1481
5VPP|1|QA|G|1482
5VPP|1|QA|A|1483
5VPP|1|QA|C|1484

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain RA

Large subunit ribosomal RNA; LSU rRNA