IL_5VPP_068

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_068 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1336

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5VPP|1|RA|U|239
5VPP|1|RA|G|240
5VPP|1|RA|A|241
5VPP|1|RA|G|242
5VPP|1|RA|U|243
5VPP|1|RA|A|244
5VPP|1|RA|G|245
*
5VPP|1|RA|C|253
5VPP|1|RA|G|254
5VPP|1|RA|A|255
5VPP|1|RA|A|256
5VPP|1|RA|A|257
5VPP|1|RA|G|258

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15