3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_077 not in the Motif Atlas
Homologous match to IL_4WF9_019
Geometric discrepancy: 0.1388
The information below is about IL_4WF9_019
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5VPP|1|RA|U|606
5VPP|1|RA|U|607
5VPP|1|RA|A|608
5VPP|1|RA|A|609
5VPP|1|RA|G|609|||A
*
5VPP|1|RA|C|618|||A
5VPP|1|RA|G|619
5VPP|1|RA|G|620
5VPP|1|RA|A|621
5VPP|1|RA|G|622

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RF
50S ribosomal protein L4
Chain RP
50S ribosomal protein L15

Coloring options:


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