IL_5VPP_082

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_082 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.1457

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5VPP|1|RA|U|703
5VPP|1|RA|G|704
5VPP|1|RA|A|705
5VPP|1|RA|A|706
5VPP|1|RA|G|707
*
5VPP|1|RA|U|724
5VPP|1|RA|G|725
5VPP|1|RA|G|726
5VPP|1|RA|A|727
5VPP|1|RA|G|728

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2