IL_5VPP_092

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_092 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.2077

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5VPP|1|RA|G|875
5VPP|1|RA|C|876
5VPP|1|RA|U|877
*
5VPP|1|RA|A|899
5VPP|1|RA|A|900
5VPP|1|RA|A|901
5VPP|1|RA|C|902

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25