IL_5VPP_122

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

5VPP|1|RA|A|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_122 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5753

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5VPP|1|RA|U|1482
5VPP|1|RA|G|1483
*
5VPP|1|RA|C|1506
5VPP|1|RA|A|1507
5VPP|1|RA|A|1508
5VPP|1|RA|C|1509
5VPP|1|RA|A|1510
5VPP|1|RA|A|1511
5VPP|1|RA|G|1512

Current chains

Chain RA

23S rRNA

Nearby chains