IL_5VPP_131

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5VPP|1|RA|G|1801, 5VPP|1|RA|G|1816, 5VPP|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_131 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.095

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5VPP|1|RA|U|1798
5VPP|1|RA|G|1799
5VPP|1|RA|C|1800
5VPP|1|RA|G|1801
5VPP|1|RA|A|1802
5VPP|1|RA|A|1803
5VPP|1|RA|C|1804
*
5VPP|1|RA|G|1813
5VPP|1|RA|G|1814
5VPP|1|RA|A|1815
5VPP|1|RA|G|1816
5VPP|1|RA|G|1817
5VPP|1|RA|U|1818
5VPP|1|RA|A|1819
5VPP|1|RA|U|1820
5VPP|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2