IL_5VPP_134

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

5VPP|1|RA|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_134 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.1301

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5VPP|1|RA|G|1846
5VPP|1|RA|A|1847
5VPP|1|RA|A|1848
5VPP|1|RA|G|1849
*
5VPP|1|RA|C|1893
5VPP|1|RA|C|1894

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QV

Transfer RNA; tRNA

Chain RD

50S ribosomal protein L2