IL_5VPP_148

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

5VPP|1|RA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_148 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.5096

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|RA|C|2129
5VPP|1|RA|U|2130
5VPP|1|RA|G|2131
5VPP|1|RA|U|2132
5VPP|1|RA|G|2133
5VPP|1|RA|A|2134
5VPP|1|RA|A|2135
5VPP|1|RA|C|2136
*
5VPP|1|RA|G|2155
5VPP|1|RA|G|2156
5VPP|1|RA|G|2157
5VPP|1|RA|A|2158
5VPP|1|RA|G|2159

Current chains

Chain RA

23S rRNA

Nearby chains