IL_5VPP_163

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

5VPP|1|RA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_163 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.1894

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5VPP|1|RA|C|2652
5VPP|1|RA|U|2653
5VPP|1|RA|A|2654
5VPP|1|RA|G|2655
5VPP|1|RA|U|2656
5VPP|1|RA|A|2657
5VPP|1|RA|C|2658
*
5VPP|1|RA|G|2663
5VPP|1|RA|G|2664
5VPP|1|RA|A|2665
5VPP|1|RA|C|2666
5VPP|1|RA|C|2667
5VPP|1|RA|G|2668

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6