IL_5VPP_186
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 5VPP|1|XA|U|244, 5VPP|1|XA|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_186 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0936
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5VPP|1|XA|C|242
5VPP|1|XA|A|243
5VPP|1|XA|U|244
5VPP|1|XA|C|245
5VPP|1|XA|A|246
5VPP|1|XA|G|247
*
5VPP|1|XA|C|277
5VPP|1|XA|G|278
5VPP|1|XA|A|279
5VPP|1|XA|C|280
5VPP|1|XA|G|281
5VPP|1|XA|A|282
5VPP|1|XA|C|283
5VPP|1|XA|G|284
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
- Chain XQ
- 30S ribosomal protein S17
Coloring options: