IL_5VPP_197

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5VPP|1|XA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_197 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1049

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5VPP|1|XA|C|569
5VPP|1|XA|G|570
5VPP|1|XA|U|571
5VPP|1|XA|A|572
5VPP|1|XA|A|573
5VPP|1|XA|A|574
5VPP|1|XA|G|575
*
5VPP|1|XA|C|880
5VPP|1|XA|G|881

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

30S ribosomal protein S5

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17