IL_5VPP_201
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_201 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.2347
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5VPP|1|XA|U|605
5VPP|1|XA|G|606
5VPP|1|XA|A|607
5VPP|1|XA|A|608
5VPP|1|XA|A|609
5VPP|1|XA|G|610
5VPP|1|XA|A|611
5VPP|1|XA|C|612
*
5VPP|1|XA|G|628
5VPP|1|XA|G|629
5VPP|1|XA|G|630
5VPP|1|XA|G|631
5VPP|1|XA|A|632
5VPP|1|XA|G|633
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XD
- 30S ribosomal protein S4
- Chain XH
- 30S ribosomal protein S8
- Chain XP
- 30S ribosomal protein S16
- Chain XQ
- 30S ribosomal protein S17
Coloring options: