IL_5VPP_205

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAAUU*AGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_205 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.1235

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

5VPP|1|XA|G|673
5VPP|1|XA|G|674
5VPP|1|XA|A|675
5VPP|1|XA|A|676
5VPP|1|XA|U|677
5VPP|1|XA|U|678
*
5VPP|1|XA|A|712
5VPP|1|XA|G|713
5VPP|1|XA|G|714
5VPP|1|XA|A|715
5VPP|1|XA|A|716
5VPP|1|XA|C|717

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XK

30S ribosomal protein S11

Chain XR

30S ribosomal protein S18

Chain YD

50S ribosomal protein L2