IL_5VPP_206

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

5VPP|1|XA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_206 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1653

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5VPP|1|XA|G|683
5VPP|1|XA|A|684
5VPP|1|XA|G|685
5VPP|1|XA|U|686
5VPP|1|XA|A|687
5VPP|1|XA|G|688
*
5VPP|1|XA|C|699
5VPP|1|XA|G|700
5VPP|1|XA|C|701
5VPP|1|XA|A|702
5VPP|1|XA|G|703
5VPP|1|XA|A|704
5VPP|1|XA|U|705
5VPP|1|XA|A|706
5VPP|1|XA|C|707

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA