IL_5VPP_209

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_209 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1269

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5VPP|1|XA|G|887
5VPP|1|XA|G|888
5VPP|1|XA|A|889
5VPP|1|XA|G|890
5VPP|1|XA|U|891
5VPP|1|XA|A|892
5VPP|1|XA|C|893
5VPP|1|XA|G|894
*
5VPP|1|XA|U|905
5VPP|1|XA|G|906
5VPP|1|XA|A|907
5VPP|1|XA|A|908
5VPP|1|XA|A|909
5VPP|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17