IL_5VPP_277
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5VPP|1|YA|U|1026, 5VPP|1|YA|A|1127, 5VPP|1|YA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_277 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0788
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5VPP|1|YA|G|1024
5VPP|1|YA|G|1025
5VPP|1|YA|U|1026
5VPP|1|YA|A|1027
5VPP|1|YA|A|1028
5VPP|1|YA|A|1029
5VPP|1|YA|G|1030
*
5VPP|1|YA|C|1124
5VPP|1|YA|G|1125
5VPP|1|YA|A|1126
5VPP|1|YA|A|1127
5VPP|1|YA|A|1128
5VPP|1|YA|A|1129
5VPP|1|YA|U|1130
5VPP|1|YA|G|1131
5VPP|1|YA|A|1132
5VPP|1|YA|U|1133
5VPP|1|YA|C|1135
5VPP|1|YA|G|1136
5VPP|1|YA|G|1137
5VPP|1|YA|G|1138
5VPP|1|YA|G|1139
5VPP|1|YA|C|1140
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YE
- 50S ribosomal protein L3
- Chain YN
- 50S ribosomal protein L13
- Chain YQ
- 50S ribosomal protein L16
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