IL_5VPP_289

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5VPP|1|YA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_289 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1018

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5VPP|1|YA|C|1351
5VPP|1|YA|U|1352
5VPP|1|YA|A|1353
5VPP|1|YA|A|1354
5VPP|1|YA|G|1355
*
5VPP|1|YA|C|1376
5VPP|1|YA|G|1377
5VPP|1|YA|A|1378
5VPP|1|YA|A|1379
5VPP|1|YA|G|1380

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YD

50S ribosomal protein L2