3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
UGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_290 not in the Motif Atlas
Homologous match to IL_7RQB_053
Geometric discrepancy: 0.1922
The information below is about IL_7RQB_053
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
24

Unit IDs

5VPP|1|YA|U|1357
5VPP|1|YA|G|1358
5VPP|1|YA|A|1359
5VPP|1|YA|A|1360
5VPP|1|YA|G|1361
*
5VPP|1|YA|C|1370
5VPP|1|YA|G|1371
5VPP|1|YA|U|1372
5VPP|1|YA|A|1373
5VPP|1|YA|G|1374

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y1
50S ribosomal protein L28
Chain Y7
50S ribosomal protein L34
Chain YD
50S ribosomal protein L2

Coloring options:


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