IL_5VPP_294

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

5VPP|1|YA|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_294 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.083

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5VPP|1|YA|C|1437
5VPP|1|YA|U|1438
5VPP|1|YA|A|1439
5VPP|1|YA|G|1440
*
5VPP|1|YA|C|1551
5VPP|1|YA|G|1552
5VPP|1|YA|A|1553
5VPP|1|YA|A|1554
5VPP|1|YA|G|1555

Current chains

Chain YA

23S rRNA

Nearby chains