IL_5VPP_300

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5VPP|1|YA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_300 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.1949

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5VPP|1|YA|G|1526
5VPP|1|YA|G|1527
5VPP|1|YA|A|1528
5VPP|1|YA|A|1529
5VPP|1|YA|G|1530
*
5VPP|1|YA|U|1541
5VPP|1|YA|G|1542
5VPP|1|YA|A|1543
5VPP|1|YA|C|1544
5VPP|1|YA|A|1545
5VPP|1|YA|A|1545|||A
5VPP|1|YA|C|1546

Current chains

Chain YA

23S rRNA

Nearby chains