IL_5VPP_319

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

5VPP|1|YA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_319 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0943

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5VPP|1|YA|C|2081
5VPP|1|YA|A|2082
5VPP|1|YA|G|2083
*
5VPP|1|YA|C|2236
5VPP|1|YA|G|2237
5VPP|1|YA|G|2238
5VPP|1|YA|G|2239

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2