IL_5VPP_321

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_321 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1737

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5VPP|1|YA|C|2108
5VPP|1|YA|U|2109
5VPP|1|YA|G|2110
*
5VPP|1|YA|C|2179
5VPP|1|YA|U|2180
5VPP|1|YA|G|2181

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA