IL_5VPP_336

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5VPP|1|YA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_336 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.1758

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

5VPP|1|YA|U|2522
5VPP|1|YA|G|2523
*
5VPP|1|YA|C|2540
5VPP|1|YA|A|2541
5VPP|1|YA|A|2542
5VPP|1|YA|G|2543

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YN

50S ribosomal protein L13