IL_5VPP_352

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUG*CGAC

Length

7 nucleotides

Bulged bases

5VPP|1|QA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_352 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2831

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5VPP|1|QA|G|44
5VPP|1|QA|U|45
5VPP|1|QA|G|46
*
5VPP|1|QA|C|395
5VPP|1|QA|G|396
5VPP|1|QA|A|397
5VPP|1|QA|C|398

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9