IL_5VPP_362

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5VPP|1|RA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_362 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.2027

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5VPP|1|RA|C|844
5VPP|1|RA|G|845
5VPP|1|RA|C|846
5VPP|1|RA|U|847
5VPP|1|RA|G|848
5VPP|1|RA|A|849
5VPP|1|RA|C|850
*
5VPP|1|RA|G|928
5VPP|1|RA|G|929
5VPP|1|RA|U|930
5VPP|1|RA|G|931
5VPP|1|RA|G|932
5VPP|1|RA|A|933
5VPP|1|RA|G|934

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30