3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CAGAAG*UGGUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_365 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.3272
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5VPP|1|RA|C|1468
5VPP|1|RA|A|1469
5VPP|1|RA|G|1470
5VPP|1|RA|A|1471
5VPP|1|RA|A|1472
5VPP|1|RA|G|1473
*
5VPP|1|RA|U|1520
5VPP|1|RA|G|1521
5VPP|1|RA|G|1522
5VPP|1|RA|U|1523
5VPP|1|RA|G|1524

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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