IL_5VPP_365
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGAAG*UGGUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_365 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.3272
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5VPP|1|RA|C|1468
5VPP|1|RA|A|1469
5VPP|1|RA|G|1470
5VPP|1|RA|A|1471
5VPP|1|RA|A|1472
5VPP|1|RA|G|1473
*
5VPP|1|RA|U|1520
5VPP|1|RA|G|1521
5VPP|1|RA|G|1522
5VPP|1|RA|U|1523
5VPP|1|RA|G|1524
Current chains
- Chain RA
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: