IL_5VPP_366

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_366 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.1161

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5VPP|1|RA|G|1666
5VPP|1|RA|G|1667
5VPP|1|RA|A|1668
5VPP|1|RA|A|1669
5VPP|1|RA|C|1670
5VPP|1|RA|U|1671
5VPP|1|RA|C|1672
5VPP|1|RA|U|1673
5VPP|1|RA|G|1674
*
5VPP|1|RA|C|1990
5VPP|1|RA|U|1991
5VPP|1|RA|G|1992
5VPP|1|RA|U|1993
5VPP|1|RA|C|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14