IL_5VPP_372

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_372 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.1886

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

5VPP|1|XA|G|597
5VPP|1|XA|U|598
5VPP|1|XA|C|599
*
5VPP|1|XA|G|639
5VPP|1|XA|A|640
5VPP|1|XA|U|641
5VPP|1|XA|A|642
5VPP|1|XA|C|643

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XH

30S ribosomal protein S8

Chain XQ

30S ribosomal protein S17