IL_5VSU_001
3D structure
- PDB id
- 5VSU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAACAAUACAGAGAUGAUCA*UUUAC
- Length
- 26 nucleotides
- Bulged bases
- 5VSU|1|I|A|45, 5VSU|1|I|A|49, 5VSU|1|I|A|51, 5VSU|1|I|A|53, 5VSU|1|I|U|54, 5VSU|1|I|G|55, 5VSU|1|I|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34739.3
- Basepair signature
- cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 3
Unit IDs
5VSU|1|I|G|39
5VSU|1|I|A|40
5VSU|1|I|A|41
5VSU|1|I|A|42
5VSU|1|I|C|43
5VSU|1|I|A|44
5VSU|1|I|A|45
5VSU|1|I|U|46
5VSU|1|I|A|47
5VSU|1|I|C|48
5VSU|1|I|A|49
5VSU|1|I|G|50
5VSU|1|I|A|51
5VSU|1|I|G|52
5VSU|1|I|A|53
5VSU|1|I|U|54
5VSU|1|I|G|55
5VSU|1|I|A|56
5VSU|1|I|U|57
5VSU|1|I|C|58
5VSU|1|I|A|59
*
5VSU|1|I|U|88
5VSU|1|I|U|89
5VSU|1|I|U|90
5VSU|1|I|A|91
5VSU|1|I|C|92
Current chains
- Chain I
- Saccharomyces cerevisiae strain T8 chromosome XII sequence
Nearby chains
- Chain A
- U4/U6 snRNA-associated-splicing factor PRP24
Coloring options: