IL_5VYC_003

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

5VYC|1|i1|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_003 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.2964

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5VYC|1|i1|C|37
5VYC|1|i1|A|38
5VYC|1|i1|A|39
5VYC|1|i1|A|40
*
5VYC|1|i1|U|514
5VYC|1|i1|G|515
5VYC|1|i1|A|516
5VYC|1|i1|C|517
5VYC|1|i1|G|518

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain E1

40S ribosomal protein S4, X isoform

Chain J1

40S ribosomal protein S9

Chain Y1

40S ribosomal protein S24