IL_5VYC_006
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_006 not in the Motif Atlas
- Homologous match to IL_4V88_389
- Geometric discrepancy: 0.1884
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
5VYC|1|i1|U|57
5VYC|1|i1|C|58
5VYC|1|i1|U|59
5VYC|1|i1|A|60
5VYC|1|i1|A|61
5VYC|1|i1|G|62
*
5VYC|1|i1|C|86
5VYC|1|i1|U|87
5VYC|1|i1|G|88
Current chains
- Chain i1
- Human 18S ribosomal RNA
Nearby chains
- Chain E1
- 40S ribosomal protein S4, X isoform
- Chain G1
- 40S ribosomal protein S6
- Chain Y1
- 40S ribosomal protein S24
Coloring options: