IL_5VYC_013

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CUGU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_013 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3144

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5VYC|1|i1|C|151
5VYC|1|i1|U|152
5VYC|1|i1|G|153
5VYC|1|i1|U|154
*
5VYC|1|i1|A|164
5VYC|1|i1|G|165
5VYC|1|i1|A|166
5VYC|1|i1|G|167

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain G1

40S ribosomal protein S6

Chain Y1

40S ribosomal protein S24