IL_5VYC_014

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i1|C|188
5VYC|1|i1|U|189
5VYC|1|i1|G|190
5VYC|1|i1|A|191
5VYC|1|i1|C|192
*
5VYC|1|i1|G|207
5VYC|1|i1|G|208
5VYC|1|i1|A|209
5VYC|1|i1|U|210
5VYC|1|i1|G|211

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain F6

40S ribosomal protein S5

Chain I1

40S ribosomal protein S8

Chain Z6

40S ribosomal protein S25